Xiaoyan Feng

Xiaoyan Feng


Goethe University Frankfurt

Latent variable models are powerful statistical tools that can uncover relevant variation between patients or cells, by inferring unobserved hidden states from observable high-dimensional data. A major shortcoming of current methods, however, is their inability to learn sparse and interpretable hidden states. Additionally, in settings where partial knowledge on the latent structure of the data is readily available, a statistically sound integration of prior information into current methods is challenging. To address these issues, we propose a factorial latent variable model with sparse priors to encourage the inference of explainable factors driven by domain-relevant information. Our approach utilizes existing knowledge of curated biomedical pathways to automatically assign annotated attributes to latent factors, yielding interpretable results tailored to the corresponding domain of interest.

  • Encoding Pathway Gene Sets with Sparse Priors for Inferring Explainable Latent Variables
  • BSc in Computer Science, 2021

    Goethe-Universität Frankfurt am Main